PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00211.4
Common NameAMTR_s00211p00025860
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ARF
Protein Properties Length: 725aa    MW: 80176.3 Da    PI: 4.9835
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00211.4genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.66.1e-2045145198
                                             EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TT CS
                                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkG 64 
                                             f+k+lt sd++++g +++p++ ae+        ++++++  +++ +d++ + W++++iyr++++r++lt+G
  evm_27.model.AmTr_v1.0_scaffold00211.4  45 FCKTLTASDTSTHGGFSVPRRAAEKLfppldftMQPPAQ--EIVARDLHDNLWTFRHIYRGQPKRHLLTTG 113
                                             99*********************999*****96555544..8***************************** PP

                                             HHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                                      B3  65 WkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                                             W+ Fv a++Lk+  +v+F   ++++ +l+++v+r
  evm_27.model.AmTr_v1.0_scaffold00211.4 114 WSLFVGAKRLKADVSVLFI--RDEKSHLCLGVRR 145
                                             *******************..4577778999988 PP

2Auxin_resp105.36.9e-35171254183
                              Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdld 70 
                                             a++aa+ +s+F+v+YnPras+seFvv+++kv+ka++ ++ s+GmRf m+fete+s +rr++Gt++g+ d+d
  evm_27.model.AmTr_v1.0_scaffold00211.4 171 ASQAATYHSPFTVFYNPRASPSEFVVPLAKVHKAVYgRHTSIGMRFGMMFETEESGKRRYMGTITGICDID 241
                                             6789999*****************************8999******************************* PP

                              Auxin_resp  71 pvrWpnSkWrsLk 83 
                                              ++WpnSkW +L+
  evm_27.model.AmTr_v1.0_scaffold00211.4 242 AIQWPNSKWHNLQ 254
                                             **********997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.66E-4132173IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-3637158IPR015300DNA-binding pseudobarrel domain
CDDcd100173.25E-1944145No hitNo description
SMARTSM010191.4E-1945147IPR003340B3 DNA binding domain
PfamPF023622.8E-1845145IPR003340B3 DNA binding domain
PROSITE profilePS5086310.36245147IPR003340B3 DNA binding domain
PfamPF065071.3E-31171254IPR010525Auxin response factor
PfamPF023092.6E-9607698IPR033389AUX/IAA domain
PROSITE profilePS5174522.654610694IPR000270PB1 domain
SuperFamilySSF542775.17E-8626689No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0009942Biological Processlongitudinal axis specification
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0048507Biological Processmeristem development
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0042802Molecular Functionidentical protein binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    Send to blast
MDPQADKDTD EVYAQMTLQP VKSEMDLFSV PDFGQKQSKH PSEFFCKTLT ASDTSTHGGF  60
SVPRRAAEKL FPPLDFTMQP PAQEIVARDL HDNLWTFRHI YRGQPKRHLL TTGWSLFVGA  120
KRLKADVSVL FIRDEKSHLC LGVRREMRQQ TILSSSVLSV DSMHIGVLAA ASQAATYHSP  180
FTVFYNPRAS PSEFVVPLAK VHKAVYGRHT SIGMRFGMMF ETEESGKRRY MGTITGICDI  240
DAIQWPNSKW HNLQVEWDEP EAGDRQNRVS VWEIEIADCP FLLCPLTMSG LKRPYQADLI  300
SSAEETEGSS MVKRSSSWFR ETDISGLQNP VNLNMNIEHL MKMLRKPRSA PMAQLGSQEL  360
GNIEDLILHT PCFQSITGFL KSSGPQFGLN KPDASILSSL ISSDTSIHVP EIGNTVDKLQ  420
FPCNSSADFV DATQYIESLS QELFGLADLP NVKNACQTEQ NALESQQNEL ESQLSRRGLI  480
SLLVGTTIPS TVNSCGLGDF SEESNEQSET YSNIQFEGSN GSILIDSSIS SSGLEGFGTL  540
RAPSEGLLGG ISSSLDLQSQ VTSTSGVDNQ SLSILGMPVN SGATSSSNVE INENSFFPRN  600
SWRQVTPQMR TYTKVQKLGS VGRSIDVTQF KNYEELTFAI ACMFGLKGKL EDPRTSSWKL  660
VYVDYENDVL LVGDDPWEEF VACVKCIRIL SPSEVQQMSQ EGLQLLNNSA KLATGSGDHV  720
WDRP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1454278116391Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006840655.20.0PREDICTED: auxin response factor 5
SwissprotP930241e-148ARFE_ARATH; Auxin response factor 5
TrEMBLW1P5U20.0W1P5U2_AMBTC; Auxin response factor
STRINGPOPTR_0005s25800.11e-160(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP82601216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.11e-149ARF family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]